aa9 lpmo sequences Search Results


aa9 lpmo sequences  (ATCC)
94
ATCC aa9 lpmo sequences
Genome analysis of Ascomycota and Basidiomycota. The protein sequence annotations of 336 Ascomycota and 208 Basidiomycota genomes were used for genome analysis. In total, a 277 Ascomycota and b 178 Basidiomycota comprise <t>AA9</t> LPMOs encoding genes ( blue column ). Next to this occurrence of AA9 LPMOs encoding genes in Ascomycota and Basidiomycota, the co-occurrence of both Ab PPO-like and Mt PPO7-like, or either Ab PPO-like or Mt PPO7-like enzymes is indicated on the right of each column . The number of Ascomycota and Basidiomycota without co-occurrence of AA9 LPMOs encoding genes was 59 and 30, respectively ( red column ). In total, 50 Ascomycota and 17 Basidiomycota species were determined that do not carry any genes encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s. c Total number of AA9 LPMOs, Ab PPOs, and Mt PPO7s encoding genes annotated in 336 Ascomycota and 208 Basidiomycota genomes. d Distribution of annotated AA9 LPMOs, Ab PPOs, and Mt PPO7s encoding genes within 336 Ascomycota and 208 Basidiomycota genomes. See “ ” for details
Aa9 Lpmo Sequences, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/aa9+lpmo+sequences/Neurospora+crassa+Shear+et+Dodge/pmc05424327-299-72-86
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nexera series  (Shimadzu Corporation)
99
Shimadzu Corporation nexera series
Genome analysis of Ascomycota and Basidiomycota. The protein sequence annotations of 336 Ascomycota and 208 Basidiomycota genomes were used for genome analysis. In total, a 277 Ascomycota and b 178 Basidiomycota comprise <t>AA9</t> LPMOs encoding genes ( blue column ). Next to this occurrence of AA9 LPMOs encoding genes in Ascomycota and Basidiomycota, the co-occurrence of both Ab PPO-like and Mt PPO7-like, or either Ab PPO-like or Mt PPO7-like enzymes is indicated on the right of each column . The number of Ascomycota and Basidiomycota without co-occurrence of AA9 LPMOs encoding genes was 59 and 30, respectively ( red column ). In total, 50 Ascomycota and 17 Basidiomycota species were determined that do not carry any genes encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s. c Total number of AA9 LPMOs, Ab PPOs, and Mt PPO7s encoding genes annotated in 336 Ascomycota and 208 Basidiomycota genomes. d Distribution of annotated AA9 LPMOs, Ab PPOs, and Mt PPO7s encoding genes within 336 Ascomycota and 208 Basidiomycota genomes. See “ ” for details
Nexera Series, supplied by Shimadzu Corporation, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/aa9+lpmo+sequences/Nexera+Series/custom%40228-65002-58%4033230603
Average 99 stars, based on 1 article reviews
nexera series - by Bioz Stars, 2026-10
99/100 stars
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Genome analysis of Ascomycota and Basidiomycota. The protein sequence annotations of 336 Ascomycota and 208 Basidiomycota genomes were used for genome analysis. In total, a 277 Ascomycota and b 178 Basidiomycota comprise AA9 LPMOs encoding genes ( blue column ). Next to this occurrence of AA9 LPMOs encoding genes in Ascomycota and Basidiomycota, the co-occurrence of both Ab PPO-like and Mt PPO7-like, or either Ab PPO-like or Mt PPO7-like enzymes is indicated on the right of each column . The number of Ascomycota and Basidiomycota without co-occurrence of AA9 LPMOs encoding genes was 59 and 30, respectively ( red column ). In total, 50 Ascomycota and 17 Basidiomycota species were determined that do not carry any genes encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s. c Total number of AA9 LPMOs, Ab PPOs, and Mt PPO7s encoding genes annotated in 336 Ascomycota and 208 Basidiomycota genomes. d Distribution of annotated AA9 LPMOs, Ab PPOs, and Mt PPO7s encoding genes within 336 Ascomycota and 208 Basidiomycota genomes. See “ ” for details

Journal: Biotechnology for Biofuels

Article Title: Boosting LPMO-driven lignocellulose degradation by polyphenol oxidase-activated lignin building blocks

doi: 10.1186/s13068-017-0810-4

Figure Lengend Snippet: Genome analysis of Ascomycota and Basidiomycota. The protein sequence annotations of 336 Ascomycota and 208 Basidiomycota genomes were used for genome analysis. In total, a 277 Ascomycota and b 178 Basidiomycota comprise AA9 LPMOs encoding genes ( blue column ). Next to this occurrence of AA9 LPMOs encoding genes in Ascomycota and Basidiomycota, the co-occurrence of both Ab PPO-like and Mt PPO7-like, or either Ab PPO-like or Mt PPO7-like enzymes is indicated on the right of each column . The number of Ascomycota and Basidiomycota without co-occurrence of AA9 LPMOs encoding genes was 59 and 30, respectively ( red column ). In total, 50 Ascomycota and 17 Basidiomycota species were determined that do not carry any genes encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s. c Total number of AA9 LPMOs, Ab PPOs, and Mt PPO7s encoding genes annotated in 336 Ascomycota and 208 Basidiomycota genomes. d Distribution of annotated AA9 LPMOs, Ab PPOs, and Mt PPO7s encoding genes within 336 Ascomycota and 208 Basidiomycota genomes. See “ ” for details

Article Snippet: The protein BLAST was performed separately using ten Mt PPO7 sequences [PDB id: 4j3p and closely related Mt PPO7s: Q2UNF9, Aspergillus oryzae (strain ATCC 42149); G2QC95, Myceliophthora thermophila (ATCC 42464); Q2H7I7, Chaetomium globosum (ATCC 6205); G0SFX8, Chaetomium thermophilum (DSM 1495); L7IAQ4, Magnaporthe oryzae (strain Y34); L7JMT9, Magnaporthe oryzae (strain P131); G4N2I5, Magnaporthe oryzae (strain 70-15); A0A084GCK1, Scedosporium apiospermum ; A0A0C4DYF2, Magnaporthiopsis poae (ATCC 64411); J3P591, Gaeumannomyces graminis var. tritici (strain R3-111a-1)], ten AA9 LPMO sequences (PDB id: 4d7u and closely related LPMOs: Q7SHI8, Neurospora crassa (strain ATCC 24698); G2QCJ3, Myceliophthora thermophila (strain ATCC 42464); F7W1P4, Sordaria macrospora (strain ATCC MYA-333); G2RB73, Thielavia terrestris (strain ATCC 38088); Q2H8N9, Chaetomium globosum (strain ATCC 6205); G0S408, Chaetomium thermophilum (strain DSM 1495); F8MLY8, N eurospora tetrasperma (strain FGSC 2508); T0L448, Colletotrichum gloeosporioides (strain Cg-14); A0A0H4K9X4 and A0A1C9CXI0, Myceliophthora thermophila C1); and four Ab PPOs ( Ab PPO1, Ab PPO2, Ab PPO3, and Ab PPO4 [ , ]) as query sequences.

Techniques: Sequencing

Statistical genome analysis of Ascomycota and Basidiomycota. a Principal component analysis (PCA) of genes encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s of 336 Ascomycota and 208 Basidiomycota genomes. The numbers which describe the presence of genes encoding AA9 LPMOs, Mt PPO7s, and Ab PPOs in each fungal species were used as variables and are presented as principal components of Ascomycota ( red dots ) and Basidiomycota ( blue dots ). The first two components of the PCA explained 69.8 and 19.6% variation in the data, respectively. Vectors ( red arrows ) with a similar orientation illustrate a high correlation between the gene families ( b ). The axis legends indicate the overall contribution of the three gene families encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s. b Correlation between the three gene families encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s of 336 Ascomycota ( upper triangle ) and 208 Basidiomycota ( lower triangle ). c Correlation between genes encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s of 27 Ascomycota ( upper triangle ) and 23 Basidiomycota ( lower triangle ), which have at least ten annotated genes encoding cellulose-degrading enzymes per fungus. Species of both fungal classes are listed in Additional file : Table S2 and Additional file : Table S3. Numerical values of the correlations of b and c are presented in Additional file : Figure S6. See “ ” for details

Journal: Biotechnology for Biofuels

Article Title: Boosting LPMO-driven lignocellulose degradation by polyphenol oxidase-activated lignin building blocks

doi: 10.1186/s13068-017-0810-4

Figure Lengend Snippet: Statistical genome analysis of Ascomycota and Basidiomycota. a Principal component analysis (PCA) of genes encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s of 336 Ascomycota and 208 Basidiomycota genomes. The numbers which describe the presence of genes encoding AA9 LPMOs, Mt PPO7s, and Ab PPOs in each fungal species were used as variables and are presented as principal components of Ascomycota ( red dots ) and Basidiomycota ( blue dots ). The first two components of the PCA explained 69.8 and 19.6% variation in the data, respectively. Vectors ( red arrows ) with a similar orientation illustrate a high correlation between the gene families ( b ). The axis legends indicate the overall contribution of the three gene families encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s. b Correlation between the three gene families encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s of 336 Ascomycota ( upper triangle ) and 208 Basidiomycota ( lower triangle ). c Correlation between genes encoding AA9 LPMOs, Ab PPOs, and Mt PPO7s of 27 Ascomycota ( upper triangle ) and 23 Basidiomycota ( lower triangle ), which have at least ten annotated genes encoding cellulose-degrading enzymes per fungus. Species of both fungal classes are listed in Additional file : Table S2 and Additional file : Table S3. Numerical values of the correlations of b and c are presented in Additional file : Figure S6. See “ ” for details

Article Snippet: The protein BLAST was performed separately using ten Mt PPO7 sequences [PDB id: 4j3p and closely related Mt PPO7s: Q2UNF9, Aspergillus oryzae (strain ATCC 42149); G2QC95, Myceliophthora thermophila (ATCC 42464); Q2H7I7, Chaetomium globosum (ATCC 6205); G0SFX8, Chaetomium thermophilum (DSM 1495); L7IAQ4, Magnaporthe oryzae (strain Y34); L7JMT9, Magnaporthe oryzae (strain P131); G4N2I5, Magnaporthe oryzae (strain 70-15); A0A084GCK1, Scedosporium apiospermum ; A0A0C4DYF2, Magnaporthiopsis poae (ATCC 64411); J3P591, Gaeumannomyces graminis var. tritici (strain R3-111a-1)], ten AA9 LPMO sequences (PDB id: 4d7u and closely related LPMOs: Q7SHI8, Neurospora crassa (strain ATCC 24698); G2QCJ3, Myceliophthora thermophila (strain ATCC 42464); F7W1P4, Sordaria macrospora (strain ATCC MYA-333); G2RB73, Thielavia terrestris (strain ATCC 38088); Q2H8N9, Chaetomium globosum (strain ATCC 6205); G0S408, Chaetomium thermophilum (strain DSM 1495); F8MLY8, N eurospora tetrasperma (strain FGSC 2508); T0L448, Colletotrichum gloeosporioides (strain Cg-14); A0A0H4K9X4 and A0A1C9CXI0, Myceliophthora thermophila C1); and four Ab PPOs ( Ab PPO1, Ab PPO2, Ab PPO3, and Ab PPO4 [ , ]) as query sequences.

Techniques: